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Loading data

Goal: get data into BrainDeer — via drag & drop, the file list, a BIDS dataset or DICOM import.

Drag & drop

Drag files directly onto a viewer tile (sagittal / coronal / axial) or into the file list:

  • .nii, .nii.gz — volumes
  • .trk, .trk.gz — tractography

Open a BIDS dataset

Extra required

pip install -e ".[bids]"

(TODO: describe the flow — pick the dataset folder, subject/session navigation.)

Import DICOM

Extra required

pip install -e ".[dicom]"

(TODO: import dialog, conversion to NIfTI via dicom2nifti.)

Media for this page

  • [ ] Video (~60 s): drag & drop onto a tile vs. file list; open a BIDS folder
  • [ ] Screenshots: the drag moment, BIDS dialog, DICOM import

See also