Python Module Index


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	`brain_deer`
	`brain_deer.app`
	`brain_deer.app.cli`
	`brain_deer.app.launch`
	`brain_deer.app.startup`
	`brain_deer.application`
	`brain_deer.application.brain_deer_api`
	`brain_deer.application.ports`
	`brain_deer.application.ports.viewer`
	`brain_deer.commands`
	`brain_deer.commands.advisor`
	`brain_deer.commands.analysis`
	`brain_deer.commands.atlas_browser`
	`brain_deer.commands.blender`
	`brain_deer.commands.definitions`
	`brain_deer.commands.leaddbs`
	`brain_deer.commands.montage`
	`brain_deer.commands.nl_intent`
	`brain_deer.commands.preferences`
	`brain_deer.commands.registry`
	`brain_deer.commands.session`
	`brain_deer.commands.warpdrive`
	`brain_deer.domain`
	`brain_deer.export`
	`brain_deer.export.screenshot_export`
	`brain_deer.infrastructure`
	`brain_deer.infrastructure.bids`
	`brain_deer.infrastructure.bids.datalad`
	`brain_deer.infrastructure.bids.derivatives`
	`brain_deer.infrastructure.bids.entities`
	`brain_deer.infrastructure.bids.import_convert`
	`brain_deer.infrastructure.bids.integrations`
	`brain_deer.infrastructure.bids.layout`
	`brain_deer.infrastructure.bids.loader`
	`brain_deer.infrastructure.bids.mapper`
	`brain_deer.infrastructure.bids.qc_batch`
	`brain_deer.infrastructure.bids.rawimages`
	`brain_deer.infrastructure.bids.session`
	`brain_deer.infrastructure.bids.sidecar`
	`brain_deer.infrastructure.bids.subject_switch`
	`brain_deer.infrastructure.bids.swap`
	`brain_deer.infrastructure.bids.tractometry`
	`brain_deer.infrastructure.bids.validate`
	`brain_deer.infrastructure.io`
	`brain_deer.infrastructure.io.dicom`
	`brain_deer.infrastructure.io.mesh`
	`brain_deer.infrastructure.io.nifti`
	`brain_deer.infrastructure.io.volume_proxy`
	`brain_deer.infrastructure.orientation`
	`brain_deer.plugin_api`
	`brain_deer.plugin_api.v1`
	`brain_deer.plugins`
	`brain_deer.plugins.braindeer_ai`
	`brain_deer.plugins.braindeer_ai.agent`
	`brain_deer.plugins.braindeer_ai.dev_context`
	`brain_deer.plugins.braindeer_ai.plugin`
	`brain_deer.plugins.braindeer_ai.prompts`
	`brain_deer.plugins.braindeer_ai.scaffold`
	`brain_deer.plugins.laminosaurus`
	`brain_deer.plugins.laminosaurus.analysis`
	`brain_deer.plugins.laminosaurus.plugin`
	`brain_deer.plugins.laminosaurus.widget`
	`brain_deer.plugins.leaddbs_atlas_widget`
	`brain_deer.plugins.leaddbs_space_paths`
	`brain_deer.plugins.leaddbs_stimulation_manager`
	`brain_deer.plugins.leaddbs_stimulation_manager.plugin`
	`brain_deer.plugins.leaddbs_stimulation_manager.widget`
	`brain_deer.plugins.roi_studio`
	`brain_deer.plugins.roi_studio.plugin`
	`brain_deer.plugins.roi_studio.widget`
	`brain_deer.plugins.vr_stream`
	`brain_deer.plugins.vr_stream.plugin`
	`brain_deer.plugins.warpdrive`
	`brain_deer.plugins.warpdrive.geometry`
	`brain_deer.plugins.warpdrive.overlay2d`
	`brain_deer.plugins.warpdrive.overlay3d`
	`brain_deer.plugins.warpdrive.plugin`
	`brain_deer.plugins.warpdrive.snap`
	`brain_deer.plugins.warpdrive.style`
	`brain_deer.plugins.warpdrive.tools`
	`brain_deer.plugins.warpdrive.tools.base`
	`brain_deer.plugins.warpdrive.tools.draw`
	`brain_deer.plugins.warpdrive.tools.point_to_point`
	`brain_deer.plugins.warpdrive.tools.shrink_expand`
	`brain_deer.plugins.warpdrive.tools.smudge`
	`brain_deer.plugins.warpdrive.widget`
	`brain_deer.plugins_host`
	`brain_deer.plugins_host.companion_registry`
	`brain_deer.plugins_host.plugin_manager`
	`brain_deer.presentation`
	`brain_deer.presentation.colormap_registry`
	`brain_deer.presentation.qt`
	`brain_deer.presentation.qt.app_menu`
	`brain_deer.presentation.qt.bids_import_dialog`
	`brain_deer.presentation.qt.bids_mapping_dialog`
	`brain_deer.presentation.qt.bids_panel`
	`brain_deer.presentation.qt.bottom_panel`
	`brain_deer.presentation.qt.colormap_editor`
	`brain_deer.presentation.qt.command_palette`
	`brain_deer.presentation.qt.invisible_splitter`
	`brain_deer.presentation.qt.left_panel`
	`brain_deer.presentation.qt.main_window`
	`brain_deer.presentation.qt.panel_auto_hide_pin`
	`brain_deer.presentation.qt.perfect_layout`
	`brain_deer.presentation.qt.preferences_window`
	`brain_deer.presentation.qt.projection_links`
	`brain_deer.presentation.qt.right_panel`
	`brain_deer.presentation.qt.scene_3d_controls`
	`brain_deer.presentation.qt.scene_rig_controls`
	`brain_deer.presentation.qt.sims_mode`
	`brain_deer.presentation.qt.surface_studio_panel`
	`brain_deer.presentation.qt.viewer_panel`
	`brain_deer.presentation.typography`
	`brain_deer.surface`
	`brain_deer.surface.atlas`
	`brain_deer.surface.connectome`
	`brain_deer.surface.figures`
	`brain_deer.surface.meshes`
	`brain_deer.surface.plotting`
	`brain_deer.surface.projection`
	`brain_deer.surface.resources`
	`brain_deer.surface.scene_model`
	`brain_deer.surface.subcortical`
	`brain_deer.surface.tracts`
	`brain_deer.tools`
	`brain_deer.tools.roi_measurement`
	`brain_deer.utils`
	`brain_deer.utils.fa_dec`
	`brain_deer.utils.load_timing`
	`brain_deer.warp`
	`brain_deer.warp.apply`
	`brain_deer.warp.corrections`
	`brain_deer.warp.field`
	`brain_deer.warp.io`
	`brain_deer.warp.modifiable`
	`brain_deer.warp.rbf`
	`brain_deer.warp.session`