API Reference

This page contains auto-generated API reference documentation [1].

• brain_deer
  • brain_deer.app
    • brain_deer.app.cli
    • brain_deer.app.launch
    • brain_deer.app.startup
  • brain_deer.application
    • brain_deer.application.brain_deer_api
    • brain_deer.application.ports
      • brain_deer.application.ports.viewer
  • brain_deer.commands
    • brain_deer.commands.advisor
    • brain_deer.commands.analysis
    • brain_deer.commands.atlas_browser
    • brain_deer.commands.blender
    • brain_deer.commands.definitions
    • brain_deer.commands.leaddbs
    • brain_deer.commands.montage
    • brain_deer.commands.nl_intent
    • brain_deer.commands.preferences
    • brain_deer.commands.registry
    • brain_deer.commands.session
    • brain_deer.commands.warpdrive
  • brain_deer.domain
  • brain_deer.export
    • brain_deer.export.screenshot_export
  • brain_deer.infrastructure
    • brain_deer.infrastructure.bids
      • brain_deer.infrastructure.bids.datalad
      • brain_deer.infrastructure.bids.derivatives
      • brain_deer.infrastructure.bids.entities
      • brain_deer.infrastructure.bids.import_convert
      • brain_deer.infrastructure.bids.integrations
      • brain_deer.infrastructure.bids.layout
      • brain_deer.infrastructure.bids.loader
      • brain_deer.infrastructure.bids.mapper
      • brain_deer.infrastructure.bids.qc_batch
      • brain_deer.infrastructure.bids.rawimages
      • brain_deer.infrastructure.bids.session
      • brain_deer.infrastructure.bids.sidecar
      • brain_deer.infrastructure.bids.subject_switch
      • brain_deer.infrastructure.bids.swap
      • brain_deer.infrastructure.bids.tractometry
      • brain_deer.infrastructure.bids.validate
    • brain_deer.infrastructure.io
      • brain_deer.infrastructure.io.dicom
      • brain_deer.infrastructure.io.mesh
      • brain_deer.infrastructure.io.nifti
      • brain_deer.infrastructure.io.volume_proxy
    • brain_deer.infrastructure.orientation
  • brain_deer.plugin_api
    • brain_deer.plugin_api.v1
  • brain_deer.plugins
    • brain_deer.plugins.braindeer_ai
      • brain_deer.plugins.braindeer_ai.agent
      • brain_deer.plugins.braindeer_ai.dev_context
      • brain_deer.plugins.braindeer_ai.plugin
      • brain_deer.plugins.braindeer_ai.prompts
      • brain_deer.plugins.braindeer_ai.scaffold
    • brain_deer.plugins.laminosaurus
      • brain_deer.plugins.laminosaurus.analysis
      • brain_deer.plugins.laminosaurus.plugin
      • brain_deer.plugins.laminosaurus.widget
    • brain_deer.plugins.leaddbs_atlas_widget
    • brain_deer.plugins.leaddbs_space_paths
    • brain_deer.plugins.leaddbs_stimulation_manager
      • brain_deer.plugins.leaddbs_stimulation_manager.plugin
      • brain_deer.plugins.leaddbs_stimulation_manager.widget
    • brain_deer.plugins.roi_studio
      • brain_deer.plugins.roi_studio.plugin
      • brain_deer.plugins.roi_studio.widget
    • brain_deer.plugins.vr_stream
      • brain_deer.plugins.vr_stream.plugin
    • brain_deer.plugins.warpdrive
      • brain_deer.plugins.warpdrive.geometry
      • brain_deer.plugins.warpdrive.overlay2d
      • brain_deer.plugins.warpdrive.overlay3d
      • brain_deer.plugins.warpdrive.plugin
      • brain_deer.plugins.warpdrive.snap
      • brain_deer.plugins.warpdrive.style
      • brain_deer.plugins.warpdrive.tools
        • brain_deer.plugins.warpdrive.tools.base
        • brain_deer.plugins.warpdrive.tools.draw
        • brain_deer.plugins.warpdrive.tools.point_to_point
        • brain_deer.plugins.warpdrive.tools.shrink_expand
        • brain_deer.plugins.warpdrive.tools.smudge
      • brain_deer.plugins.warpdrive.widget
  • brain_deer.plugins_host
    • brain_deer.plugins_host.companion_registry
    • brain_deer.plugins_host.plugin_manager
  • brain_deer.presentation
    • brain_deer.presentation.colormap_registry
    • brain_deer.presentation.qt
      • brain_deer.presentation.qt.app_menu
      • brain_deer.presentation.qt.bids_import_dialog
      • brain_deer.presentation.qt.bids_mapping_dialog
      • brain_deer.presentation.qt.bids_panel
      • brain_deer.presentation.qt.bottom_panel
      • brain_deer.presentation.qt.colormap_editor
      • brain_deer.presentation.qt.command_palette
      • brain_deer.presentation.qt.invisible_splitter
      • brain_deer.presentation.qt.left_panel
      • brain_deer.presentation.qt.main_window
      • brain_deer.presentation.qt.panel_auto_hide_pin
      • brain_deer.presentation.qt.perfect_layout
      • brain_deer.presentation.qt.preferences_window
      • brain_deer.presentation.qt.projection_links
      • brain_deer.presentation.qt.right_panel
      • brain_deer.presentation.qt.scene_3d_controls
      • brain_deer.presentation.qt.scene_rig_controls
      • brain_deer.presentation.qt.sims_mode
      • brain_deer.presentation.qt.surface_studio_panel
      • brain_deer.presentation.qt.viewer_panel
    • brain_deer.presentation.typography
  • brain_deer.surface
    • brain_deer.surface.atlas
    • brain_deer.surface.connectome
    • brain_deer.surface.figures
    • brain_deer.surface.meshes
    • brain_deer.surface.plotting
    • brain_deer.surface.projection
    • brain_deer.surface.resources
    • brain_deer.surface.scene_model
    • brain_deer.surface.subcortical
    • brain_deer.surface.tracts
  • brain_deer.tools
    • brain_deer.tools.roi_measurement
  • brain_deer.utils
    • brain_deer.utils.fa_dec
    • brain_deer.utils.load_timing
  • brain_deer.warp
    • brain_deer.warp.apply
    • brain_deer.warp.corrections
    • brain_deer.warp.field
    • brain_deer.warp.io
    • brain_deer.warp.modifiable
    • brain_deer.warp.rbf
    • brain_deer.warp.session

[1]

Created with sphinx-autoapi