brain_deer.plugins.leaddbs_space_paths¶

Portable LeadDBS MNI template paths (no machine-specific absolute paths).

Set LEADDBS_SPACE_ROOT to the directory that contains atlases/ and t1.nii (e.g. .../templates/space/MNI152NLin2009bAsym) if leadDBS is not under the default ~/leadDBS or ~/Documents/Toolboxes/leadDBS layout.

Set LEADDBS_ROOT to the leaddbs program directory (the folder that contains templates/electrode_models/) when that tree is not next to the space template or when you use a custom Lead-DBS install path. The atlas browser and future Lead-DBS/BrainDeer links use leaddbs_toolbox_root().

Functions¶

`leaddbs_space_root`(→ Optional[str])	`.../templates/space/MNI152NLin2009bAsym` if it exists on disk.
`leaddbs_toolbox_root`(→ Optional[str])	The `leaddbs` program directory (contains `templates/electrode_models/`, `ea_*.m`, …).
`fallback_atlases_path_for_ui`(→ str)	QFileDialog start path when LeadDBS is not detected.
`candidate_template_paths`(→ List[str])	Ordered unique existing template NIfTI paths under common layouts.

Module Contents¶

brain_deer.plugins.leaddbs_space_paths.leaddbs_space_root() → str | None¶: .../templates/space/MNI152NLin2009bAsym if it exists on disk.

brain_deer.plugins.leaddbs_space_paths.leaddbs_toolbox_root() → str | None¶: The leaddbs program directory (contains templates/electrode_models/, ea_*.m, …). Set LEADDBS_ROOT to your clone (e.g. .../leaddbs) so DBS features find electrode .mat files when space templates are not under the same tree. Future LeadDBS braindeer bridge uses the same root.

brain_deer.plugins.leaddbs_space_paths.fallback_atlases_path_for_ui() → str¶: QFileDialog start path when LeadDBS is not detected.

brain_deer.plugins.leaddbs_space_paths.candidate_template_paths() → List[str]¶: Ordered unique existing template NIfTI paths under common layouts.